Python scripts for analysis of epiGBS data

Author:Thomas van Gurp, Björn Wouters and Contributors Date:Jan 26, 2020 Version:1.0

The python scripts for analysis of epiGBS data are distributed over several different modules that are responsible for reference creation, reference mapping and variant calling and analysis.

The modules are mostly wrapper scripts of existing software, dependencies are listed below

Contents:

The epiGBS pipeline consists of the following steps:

1. Demultiplexing

2. Mapping and variant calling

Indices and tables

• Index
• Module Index
• Search Page

References

[vanGurp2016]

epiGBS: reference-free reduced representation bisulfite sequencing. van Gurp, T. P., Wagemaker, N. C. A. M., Wouters, B. O. R., Vergeer, P., Ouborg, J. N. J., & Verhoeven, K. J. F. Nature Methods, 1–7. http://doi.org/10.1038/nmeth.3763